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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23307675_23322586_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23307675 - 23322586
Intron Length:
14912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
SYATVYKGKSKVNGKLVALK
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.3
0.93
0.6
89.3
19.5
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
CDK14
Ensembl Gene ID:
ENSAPLG00000006499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038682
23279420 - 23536404
256985
ENSAPLT00000017679
23286058 - 23536404
250347
ENSAPLT00000006746
23222643 - 23536404
313762
ENSAPLT00000046510
23212061 - 23536404
324344