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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_233161_233345_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
233161 - 233345
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCACTCGAGC
Flanking Amino Acid:
GTYVQEESPEGGRFKKEIVV
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.1
38.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
68.2
0.41
1
67
33
Minor 5ss
38.9
-1.2
3.3
48.7
47
Minor BPS
44.7
-0.4
2
56.63
42

Associated Gene:

Gene:
AGAP3
Ensembl Gene ID:
ENSAPLG00000009810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020512
161522 - 246527
85006
ENSAPLT00000010208
161522 - 246527
85006
ENSAPLT00000007060
161522 - 267922
106401