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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_233434_237873_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
233434 - 237873
Intron Length:
4440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGTGAC
U12 Branch Point Sequence:
GGTGGGGTGACG
Flanking Amino Acid:
LSRSVPELKVGIVGNLSSGK
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
45.4
-0.2
1.4
34.5
43.7
Major PPT
81.2
0.7
0.8
72.5
37.7
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
33.2
-1.4
2.7
39.36
44.5

Associated Gene:

Gene:
AGAP3
Ensembl Gene ID:
ENSAPLG00000009810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020512
161522 - 246527
85006
ENSAPLT00000010208
161522 - 246527
85006
ENSAPLT00000007060
161522 - 267922
106401