About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23350486_23364798_F


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
23350486 - 23364798

Intron Length:
14313

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GTG|GTGAGTAAA

5'SS Class:
strong_major

3'SS Sequence:
GACTTTCTTTTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TATTAAT

U12 Branch Point Sequence:
CAGATATTAATA

Flanking Amino Acid:
ETLTLVFEYVHTDLCQYMDK

Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
85.7
0.84
0.8
81.1
26.8

Major BPS
91.8
1.04
0.7
90.2
19.3

Major PPT
76.3
0.59
0.8
73.8
36.6

Minor 5ss
29.7
-2.3
2.6
30.1
36.9

Minor BPS
48.6
-0.1
1.6
53.79
38.8

Associated Gene:

Gene:
CDK14

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

23286058 - 23536404
250347

23222643 - 23536404
313762

23212061 - 23536404
324344

23279420 - 23536404
256985