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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23379320_23400058_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23379320 - 23400058
Intron Length:
20739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGCAAG
5'SS Class:
major
3'SS Sequence:
ATTTACCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATT
Flanking Amino Acid:
DTGELKLADFGLARAKSVPS
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
61.5
44.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.8
0.53
0.9
66.4
34.8
Minor 5ss
37.5
-1.4
3.1
44.5
44.7
Minor BPS
76.9
0.92
1.4
92.73
28.9

Associated Gene:

Gene:
CDK14
Ensembl Gene ID:
ENSAPLG00000006499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017679
23286058 - 23536404
250347
ENSAPLT00000006746
23222643 - 23536404
313762
ENSAPLT00000046510
23212061 - 23536404
324344
ENSAPLT00000038682
23279420 - 23536404
256985