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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23410832_23434641_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23410832 - 23434641
Intron Length:
23810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
CTTTTGTGTACA
Flanking Amino Acid:
IQDQLERIFLVLGTPNEDTW
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
80.6
0.69
0.9
75.6
38.3
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
45
-0.4
2.4
63.15
43.1

Associated Gene:

Gene:
CDK14
Ensembl Gene ID:
ENSAPLG00000006499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038682
23279420 - 23536404
256985
ENSAPLT00000017679
23286058 - 23536404
250347
ENSAPLT00000006746
23222643 - 23536404
313762
ENSAPLT00000046510
23212061 - 23536404
324344