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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23470514_23474656_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23470514 - 23474656
Intron Length:
4143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AGTTTCTGATCT
Flanking Amino Acid:
LPPRLWELTDMSSIFTVPNV
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
0.9
78.7
29.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
94.9
1.01
0.5
91.6
19.6
Minor 5ss
35.7
-1.6
2.9
44
38.6
Minor BPS
57.7
0.32
1.7
75.97
40.3

Associated Gene:

Gene:
CDK14
Ensembl Gene ID:
ENSAPLG00000006499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038682
23279420 - 23536404
256985
ENSAPLT00000017679
23286058 - 23536404
250347
ENSAPLT00000006746
23222643 - 23536404
313762
ENSAPLT00000046510
23212061 - 23536404
324344