About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23474804_23535161_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
23474804 - 23535161
Intron Length:
60358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTTATTATAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
86.8
0.83
0.8
80.7
31.5
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
54.4
0.22
1.6
72.63
39

Associated Gene:

Gene:
CDK14
Ensembl Gene ID:
ENSAPLG00000006499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038682
23279420 - 23536404
256985
ENSAPLT00000017679
23286058 - 23536404
250347
ENSAPLT00000006746
23222643 - 23536404
313762
ENSAPLT00000046510
23212061 - 23536404
324344