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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2358482_2390433_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2358482 - 2390433
Intron Length:
31952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TATTCCTTGATT
Flanking Amino Acid:
LAIFGPVLDKATRESAFVHA
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.8
0.63
0.8
72
32.6
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
84.3
1.16
0.9
92.15
30.1

Associated Gene:

Gene:
WNT3A
Ensembl Gene ID:
ENSAPLG00000004673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037374
2309543 - 2394382
84840
ENSAPLT00000004806
2318128 - 2394382
76255
ENSAPLT00000004538
2309543 - 2394382
84840