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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23630923_23633081_R

Intron Information:

Intron Rank:
153683
Intron Class:
major
Intron Phase:
Intron Coordinates:
23630923 - 23633081
Intron Length:
2159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030176
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037572
23629189 - 23638330
9142
ENSAPLT00000030133
23629253 - 23638330
9078