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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_237933_267897_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
237933 - 267897
Intron Length:
29965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCTGT
5'SS Class:
major
3'SS Sequence:
CTCTGTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TCGTGATGATTT
Flanking Amino Acid:
MGLTRPSPDSFVNSQEWT
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
62.7
44.3
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
81.9
0.72
0.8
76.3
32.3
Minor 5ss
44.6
-0.6
3.1
65.7
45.4
Minor BPS
40.7
-0.6
2.2
57.43
45.6

Associated Gene:

Gene:
AGAP3
Ensembl Gene ID:
ENSAPLG00000009810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007060
161522 - 267922
106401