Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23827026_23827196_F

Intron Information:

Intron Rank:

150188

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

23827026 - 23827196

Intron Length:

171

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATCCTCA

5'SS Class:

weak_minor

3'SS Sequence:

TGGACTTTTGAAG|A

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

TTTACCTTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.2

0.19

1.3

52.1

41.7

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

64.2

0.32

1.1

63.8

41.8

Minor 5ss

68.6

0.63

1.8

65.5

45.7

Minor BPS

91.2

1.37

0.9

101.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030719

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017565

23814513 - 23827327

12815