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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23877281_23892365_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23877281 - 23892365
Intron Length:
15085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGCAAAC
5'SS Class:
weak_major
3'SS Sequence:
TGTCTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTGTCTTTATAC
Flanking Amino Acid:
TYTTEVSLSQVNGCSFVTRT
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.6
0.16
1.4
58.1
41.2
Major BPS
80
0.75
1
78.6
31
Major PPT
81.5
0.71
0.9
76.6
36.7
Minor 5ss
34.3
-1.8
3
43.5
43.8
Minor BPS
61
0.32
1.7
71.26
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006544
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006783
23875526 - 23896860
21335