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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23895642_23896437_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23895642 - 23896437
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTAACATGCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
SQKLQIQFQHLQASEALRNT
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.5
27.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
55.8
0.13
1.2
54.2
44.6
Minor 5ss
42.9
-0.8
2.8
57.1
40.8
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006544
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006783
23875526 - 23896860
21335