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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23896636_23896821_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23896636 - 23896821
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTCC
5'SS Class:
major
3'SS Sequence:
ATATAATTTAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATGCATATAATT
Flanking Amino Acid:
LHDKIKTYEMLSCLFQYYSS
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.2
34.6
Major BPS
79
0.72
1
78.4
31.2
Major PPT
52
0.05
1.8
58.6
45.5
Minor 5ss
47.7
-0.2
2.4
59.1
40.8
Minor BPS
48
-0
1.7
65.79
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006544
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006783
23875526 - 23896860
21335