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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23940999_23941271_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23940999 - 23941271
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGTG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
ELEQENKLFKDEMEILGLAM
Intron Amino Acid Position:
1960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.8
38.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
71.4
0.48
1
69.5
41.6
Minor 5ss
34.1
-1.8
3.5
47.2
48.2
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006934
23897406 - 23962557
65152