About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23941452_23943813_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23941452 - 23943813
Intron Length:
2362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACATACT
5'SS Class:
major
3'SS Sequence:
CTTCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCTTCATT
Flanking Amino Acid:
QQLEGTTDNKVLEEQNEHIR
Intron Amino Acid Position:
2020

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
71.7
38
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.5
0.82
0.7
84.1
30.4
Minor 5ss
38.4
-1.3
3.1
51.8
39.1
Minor BPS
67.3
0.62
1.7
84.08
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006934
23897406 - 23962557
65152