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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23946058_23946440_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23946058 - 23946440
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGAACC
5'SS Class:
major
3'SS Sequence:
TCCATATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATGACT
Flanking Amino Acid:
EAEKLQQQLSVKEASLVHLQ
Intron Amino Acid Position:
2433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
66.6
37.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.9
0.65
0.9
72.1
36.8
Minor 5ss
36.9
-1.5
3
51.1
38.9
Minor BPS
67.6
0.64
1.6
84.88
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006934
23897406 - 23962557
65152