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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23954456_23956042_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23954456 - 23956042
Intron Length:
1587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTAG
5'SS Class:
major
3'SS Sequence:
TATCTATGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TGCATTTGAAAT
Flanking Amino Acid:
ERTPSHNQNETTWDTPNERT
Intron Amino Acid Position:
3184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60.1
41.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
75.2
0.57
1
69.2
40.6
Minor 5ss
34.4
-1.8
3.5
46
49.3
Minor BPS
48.4
-0
1.5
63.17
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006934
23897406 - 23962557
65152