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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23956252_23957150_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23956252 - 23957150
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGACCA
5'SS Class:
major
3'SS Sequence:
GATGTAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTTGATGTAATT
Flanking Amino Acid:
LKKLARKAASRLQFEAADDQ
Intron Amino Acid Position:
3253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.2
66.4
39
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
69.3
0.43
1
63.8
45.8
Minor 5ss
28.6
-2.5
2.7
32.5
41.6
Minor BPS
46.4
-0.1
2.2
67.74
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006934
23897406 - 23962557
65152