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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23961619_23962340_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23961619 - 23962340
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTCCTGGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGGTTTTTAAAA
Flanking Amino Acid:
PPRSPINFQHKFHSMHADLN
Intron Amino Acid Position:
3565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
62.3
0.28
1
53.3
41.5
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
64.3
0.44
1.4
68.67
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006934
23897406 - 23962557
65152