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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23968296_23969266_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23968296 - 23969266
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCGAG
5'SS Class:
major
3'SS Sequence:
AATCTTTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TCTTCAGTAACA
Flanking Amino Acid:
FKAWGESGEKNLFEALSELI
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
66
40.1
Major BPS
77.3
0.68
1
81.5
27
Major PPT
76.5
0.6
0.8
73.9
35.7
Minor 5ss
37.4
-1.4
3.4
46.7
43.3
Minor BPS
58
0.25
2.3
76.36
40.9

Associated Gene:

Gene:
CYP51A1
Ensembl Gene ID:
ENSAPLG00000007247
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007580
23964984 - 23974767
9784