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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23969394_23971748_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23969394 - 23971748
Intron Length:
2355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTTGTTCTAATT
Flanking Amino Acid:
KGVAYDVPNAVFLEQKKMLK
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
83.9
34.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
76.9
0.61
0.8
70.5
36.3
Minor 5ss
48.2
-0.2
2.5
69.3
41.2
Minor BPS
51.7
0.13
1.8
71.16
41

Associated Gene:

Gene:
CYP51A1
Ensembl Gene ID:
ENSAPLG00000007247
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007580
23964984 - 23974767
9784