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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23971926_23972717_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23971926 - 23972717
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACTTTTTAAAA
Flanking Amino Acid:
IEFLENAYDKYGPVFSFTMV
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
88.1
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.3
0.68
0.7
73.6
31.4
Minor 5ss
45.1
-0.5
3.1
67
44.3
Minor BPS
65
0.47
1.3
69.01
37.3

Associated Gene:

Gene:
CYP51A1
Ensembl Gene ID:
ENSAPLG00000007247
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007580
23964984 - 23974767
9784