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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23972817_23974668_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23972817 - 23974668
Intron Length:
1852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAATGACA
5'SS Class:
major
3'SS Sequence:
CTTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCTGAAGAAAAT
Flanking Amino Acid:
EMVDKLIRILKYPPYISSSI
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.29
1.1
60.6
37.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
85.6
0.8
0.7
84.5
23.3
Minor 5ss
34.5
-1.8
3.1
42.8
39.2
Minor BPS
34.9
-1
2.4
54.82
46.5

Associated Gene:

Gene:
CYP51A1
Ensembl Gene ID:
ENSAPLG00000007247
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007580
23964984 - 23974767
9784