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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23980531_23980647_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23980531 - 23980647
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGGAGAAT
5'SS Class:
weak_major
3'SS Sequence:
ACATGATAATCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTATACATGATA
Flanking Amino Acid:
DNKLEYLSDKLTQLPANIHR
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.1
61.8
38.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
56
0.14
1.1
53
44.6
Minor 5ss
28.2
-2.5
3.5
38.1
41.7
Minor BPS
53.1
0.09
1.8
69.29
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023805
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037750
23979769 - 23983478
3710