Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23987589_23987931_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23987589 - 23987931

Intron Length:

343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGCTTA

5'SS Class:

major

3'SS Sequence:

CATTTCATTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

GTTTACTGCATT

Flanking Amino Acid:

GLHLLNMETKALLLSLKYGC

Intron Amino Acid Position:

618

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.63

1.3

38.1

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

76.3

0.59

0.8

70.8

34.3

Minor 5ss

42.8

-0.8

2.9

56.2

47.9

Minor BPS

49.3

0.03

2.1

74.83

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007618

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020368

23986734 - 24003576

16843

ENSAPLT00000007969

23986734 - 24003548

16815