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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23991742_23992387_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23991742 - 23992387
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGCACA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTTTTAACA
Flanking Amino Acid:
VRLPLEIEKKIEDPLAILIL
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.3
64.2
41.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.7
0.78
0.9
81.5
34.3
Minor 5ss
41.2
-1
2.5
50.3
45.8
Minor BPS
81.8
1
0.9
85.09
27.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007618
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020368
23986734 - 24003576
16843
ENSAPLT00000007969
23986734 - 24003548
16815