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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23992540_23994450_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23992540 - 23994450
Intron Length:
1911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TGGTATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATAAACA
Flanking Amino Acid:
FTIWICSENLSLQLKPYHKP
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.3
0.55
0.9
66.1
45
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
57.9
0.25
1.9
73.37
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007618
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020368
23986734 - 24003576
16843
ENSAPLT00000007969
23986734 - 24003548
16815