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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23994692_23996040_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23994692 - 23996040
Intron Length:
1349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
AGAAGTTGTGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTTTTCTTAAAA
Flanking Amino Acid:
ILLNHPEIDRCVFSQQIKHW
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.2
35.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
58.6
0.19
1.1
50.6
47.2
Minor 5ss
44.1
-0.6
2.8
56.3
41.9
Minor BPS
76.3
0.82
1.3
81.32
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007618
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007969
23986734 - 24003548
16815