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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24038330_24055973_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24038330 - 24055973
Intron Length:
17644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TTCTCTTCTATT
Flanking Amino Acid:
AARHGMNRILGTFLFVRDGN
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.2
30.8
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
81.2
0.7
0.7
75.5
26.5
Minor 5ss
33.4
-1.9
2.8
34
41.5
Minor BPS
54.6
0.22
1.9
75.69
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020257
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037880
24038142 - 24071849
33708