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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24056275_24064255_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24056275 - 24064255
Intron Length:
7981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTACCTTGACG
Flanking Amino Acid:
AASGMKTCVELLVKHGGDLF
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
78.2
0.74
1.3
79.89
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020257
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037880
24038142 - 24071849
33708