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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24099972_24100393_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24099972 - 24100393
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CGTATTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTATTCTGAAAG
Flanking Amino Acid:
GSSRRHGTSMALSSLDEDDP
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.6
0.55
0.9
68.3
37.4
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
60.3
0.19
1.6
66.48
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007995
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008334
24097889 - 24101146
3258