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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24109936_24110024_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24109936 - 24110024
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
TCGCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAG
U12 Branch Point Sequence:
GGTCCCTCCAGC
Flanking Amino Acid:
GGGGGGGGKQSKQEIHRRSA
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
39.1
Major BPS
41.5
-0.5
1.6
49.7
44
Major PPT
71.7
0.49
0.8
65.6
30.3
Minor 5ss
24.1
-3
3.2
29.4
43.5
Minor BPS
43.5
-0.5
2.2
53.91
43.3

Associated Gene:

Gene:
GATAD1
Ensembl Gene ID:
ENSAPLG00000018481
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045526
24109674 - 24113562
3889