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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24132288_24133471_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24132288 - 24133471
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TCTTCTGTAACA
Flanking Amino Acid:
ITFTSVLSLESLPDPERTHF
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
79.7
0.67
0.9
77.6
35.8
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
66
0.5
2
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008401
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027708
24129748 - 24142256
12509