Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24133559_24134443_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24133559 - 24134443

Intron Length:

885

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGAGCC

5'SS Class:

major

3'SS Sequence:

TTTCTCTATTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTTCTCTATTT

Flanking Amino Acid:

LLKECLDFAHRYELHVIMDE

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.7

0.46

1.2

60.7

36.4

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

82.3

0.73

0.8

82.1

28.7

Minor 5ss

34.1

-1.8

3.1

43.3

43.9

Minor BPS

60.6

0.41

1.9

84.33

36.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008401

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027708

24129748 - 24142256

12509

ENSAPLT00000008752

24130502 - 24142214

11713