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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24134531_24138126_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
24134531 - 24138126
Intron Length:
3596

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGT|GCAAAAAAA
5'SS Class:
weak_major
3'SS Sequence:
GCATCCGGGTCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TCTTTTTTCAGG
Flanking Amino Acid:
YTLTDISQGAVALILINPHN
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.3
0.01
1.4
54.1
38.8
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
52.1
0.05
1.1
50
43.7
Minor 5ss
23.8
-3
3.8
31.6
42.5
Minor BPS
48
-0.3
2.1
57.56
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008401
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008752
24130502 - 24142214
11713