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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24155312_24156052_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24155312 - 24156052
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCTTT
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTACATTTAACT
Flanking Amino Acid:
SEQAVRDIFNRAQAAKPCIV
Intron Amino Acid Position:
897

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.2
70.9
41.9
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
75.6
0.58
1.1
79.2
38.4
Minor 5ss
44.7
-0.6
3.2
64.8
46.5
Minor BPS
69.4
0.69
1.5
83.67
36.5

Associated Gene:

Gene:
PEX1
Ensembl Gene ID:
ENSAPLG00000008576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008976
24148499 - 24170064
21566