About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24156778_24157631_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24156778 - 24157631
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TATTTTAGAACG
Flanking Amino Acid:
LVDTIMLPAKYPELFANLPI
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.4
41.9
Major BPS
70
0.5
1
67
39.8
Major PPT
84.9
0.79
0.8
76.7
37
Minor 5ss
47.2
-0.3
2.6
66.5
44.6
Minor BPS
50.4
-0.1
1.8
62.1
39.6

Associated Gene:

Gene:
PEX1
Ensembl Gene ID:
ENSAPLG00000008576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008976
24148499 - 24170064
21566