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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24157802_24157971_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
24157802 - 24157971
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGCATTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCTGTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
RAIHACISNPTEVNLSTVDF
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.4
0.11
1.1
56.5
37.8
Major BPS
100
1.24
0.5
100
0
Major PPT
76.4
0.59
1.1
78.7
33.7
Minor 5ss
38.9
-1.3
3.2
47.6
42.8
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
PEX1
Ensembl Gene ID:
ENSAPLG00000008576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008976
24148499 - 24170064
21566