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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24158144_24159157_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24158144 - 24159157
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TGTTGTACAATT
Flanking Amino Acid:
CFQCIQSPDQKQRCEMLCSI
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
89.7
0.89
0.7
88.1
28.7
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
46.1
-0.2
2.1
69.73
41.6

Associated Gene:

Gene:
PEX1
Ensembl Gene ID:
ENSAPLG00000008576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008976
24148499 - 24170064
21566