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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24159313_24160575_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24159313 - 24160575
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
GTTATCTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TATTTTGCAATT
Flanking Amino Acid:
VEVIDCKALRVLKDLIKEVN
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
72
0.49
1
70.1
41.2
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
48.5
-0
2.1
72.41
39.3

Associated Gene:

Gene:
PEX1
Ensembl Gene ID:
ENSAPLG00000008576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008976
24148499 - 24170064
21566