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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24161519_24163035_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24161519 - 24163035
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGATGC
5'SS Class:
major
3'SS Sequence:
CTTTGCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GGACATTTAATT
Flanking Amino Acid:
SLPYHKLDHLGGVDKLGASS
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
62.9
38.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.3
0.59
0.9
70.2
35.4
Minor 5ss
32.4
-2
3
33.5
42
Minor BPS
53.6
0.19
1.5
65.22
38.9

Associated Gene:

Gene:
PEX1
Ensembl Gene ID:
ENSAPLG00000008576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018263
24160523 - 24170064
9542