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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24161627_24164134_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
24161627 - 24164134
Intron Length:
2508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTATCAGGT
5'SS Class:
weak_major
3'SS Sequence:
TCGAAATGTGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTCTTTATCT
Flanking Amino Acid:
QKTNIQVNITYASHCQRCNF
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51
0.03
1.2
48.9
40.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
50.3
0.01
1.2
49.1
42.9
Minor 5ss
45.6
-0.5
3.3
65.5
41.3
Minor BPS
73.4
0.81
1.5
87.39
38.7

Associated Gene:

Gene:
PEX1
Ensembl Gene ID:
ENSAPLG00000008576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008976
24148499 - 24170064
21566