About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24163092_24164148_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
24163092 - 24164148
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATATC
5'SS Class:
major
3'SS Sequence:
TGATGACAGCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CATCCTCTAACT
Flanking Amino Acid:
PSLLQKTNIQPPMCDTDRSL
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.4
30.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
53.1
0.07
1.2
44.6
46
Minor 5ss
41.4
-1
2.9
54.5
36.8
Minor BPS
59.4
0.37
1.7
75.45
40.9

Associated Gene:

Gene:
PEX1
Ensembl Gene ID:
ENSAPLG00000008576
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018263
24160523 - 24170064
9542