Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24164251_24164522_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

24164251 - 24164522

Intron Length:

272

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAATACT

5'SS Class:

major

3'SS Sequence:

TACAGGAATGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTGTTTTTACAG

Flanking Amino Acid:

CIHLHVKEGKEFALSVVHPT

Intron Amino Acid Position:

514

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

1.1

78.9

34.5

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

43.9

-0.3

1.7

40.1

42.6

Minor 5ss

34.1

-1.8

2.7

44.5

42.8

Minor BPS

51.1

-0.1

1.8

59.4

Associated Gene:

Gene:

PEX1

Ensembl Gene ID:

ENSAPLG00000008576

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018263

24160523 - 24170064

9542

ENSAPLT00000008976

24148499 - 24170064

21566