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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24191311_24194196_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24191311 - 24194196
Intron Length:
2886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTAAT
5'SS Class:
major
3'SS Sequence:
GGTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
GGCTATGTCACT
Flanking Amino Acid:
LAEFEEKMNENWKKELEKHR
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
79.1
36.4
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
80.6
0.69
0.9
76.9
42.1
Minor 5ss
32.4
-2
2.9
42.3
44.5
Minor BPS
40.8
-0.6
2.4
57.8
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009245
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009621
24190615 - 24198029
7415