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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24195074_24198005_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24195074 - 24198005
Intron Length:
2932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATACTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTTCATACTC
Flanking Amino Acid:
MGKRDNRVAYMNPIAMAR
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
68.2
0.41
1.1
65.6
39.8
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
51.6
0.03
1.9
67.43
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009245
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009621
24190615 - 24198029
7415