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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24214921_24216740_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24214921 - 24216740
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATGCA
5'SS Class:
strong_major
3'SS Sequence:
AACTCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TCACTGTTAACT
Flanking Amino Acid:
HMSSSQNSSEVSALSGTQSI
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
73.5
30.3
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
73.5
0.53
1
69.5
40.8
Minor 5ss
26.9
-2.7
3
32.5
42.3
Minor BPS
55.4
0.25
2.1
73.66
43.1

Associated Gene:

Gene:
CDK6
Ensembl Gene ID:
ENSAPLG00000009363
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009761
24214852 - 24341259
126408