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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24219393_24223321_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24219393 - 24223321
Intron Length:
3929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTGCCTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
TTGCCTTTCACA
Flanking Amino Acid:
SDVDQLGKIFDVIGLPEEED
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
80.6
0.69
0.8
75.6
32.9
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
61.2
0.35
1.8
72.37
40

Associated Gene:

Gene:
CDK6
Ensembl Gene ID:
ENSAPLG00000009363
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034674
24207738 - 24341259
133522
ENSAPLT00000009761
24214852 - 24341259
126408